Node 54
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0	1	T	1
6	0	0.13	0	0.87	T	0.87
7	1	0	0	0	A	1
8	0	0	0	1	T	1
9	0	0.03	0	0.96	T	0.96
10	0.33	0.3	0.03	0.34	T	0.34
11	0	0	0	1	T	1
12	0.01	0.97	0	0.02	C	0.97
13	0.01	0	0.99	0	G	0.99
14	1	0	0	0	A	1
15	0.91	0.02	0.03	0.04	A	0.91
16	0.01	0	0	0.99	T	0.99
17	0	0.99	0	0.01	C	0.99
18	0.09	0.89	0	0.02	C	0.89
19	0	0.04	0	0.96	T	0.96
20	0	0	0	1	T	1
21	0.95	0	0.04	0	A	0.95
22	0	0	1	0	G	1
23	0.03	0.95	0.01	0.01	C	0.95
24	0.08	0.68	0.12	0.11	C	0.68
25	0	0	1	0	G	1
26	1	0	0	0	A	1
27	0.03	0	0.97	0	G	0.97
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.01	0	0.99	T	0.99
31	0	1	0	0	C	1
32	1	0	0	0	A	1
33	0.01	0	0.99	0	G	0.99
34	0.01	0.93	0.01	0.05	C	0.93
35	0.11	0.06	0.43	0.39	G	0.43
36	0.01	0.32	0.01	0.67	T	0.67
37	0.93	0	0.07	0	A	0.93
38	0	0	0	1	T	1
39	0	0.1	0	0.89	T	0.89
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.02	0	0.97	T	0.97
43	0	1	0	0	C	1
44	0.02	0	0.98	0	G	0.98
45	0.03	0.22	0.04	0.71	T	0.71
46	0.09	0	0.91	0	G	0.91
47	0.19	0.58	0.18	0.04	C	0.58
48	0.66	0.11	0.17	0.06	A	0.66
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.1	0.11	0.72	0.06	G	0.72
52	1	0	0	0	A	1
53	1	0	0	0	A	1
54	0.86	0.01	0.13	0.01	A	0.86
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.97	0	0.03	0	A	0.97
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	0.99	0	0	0.01	A	0.99
63	0.02	0	0.98	0	G	0.98
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	0.99	0	0.01	C	0.99
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.08	0	0.92	T	0.92
70	0.99	0	0.01	0	A	0.99
71	0	0	0	1	T	1
72	0.06	0.01	0.92	0.01	G	0.92
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	0	0	1	0	G	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.04	0.73	0.06	0.17	C	0.73
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0.61	0	0.39	C	0.61
82	0.95	0	0.05	0	A	0.95
83	0.99	0.01	0	0	A	0.99
84	0.01	0.85	0.01	0.14	C	0.85
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.08	0	0.92	T	0.92
88	0.84	0.03	0.12	0.01	A	0.84
89	0	0	0	1	T	1
90	0	0.16	0	0.84	T	0.84
91	0.02	0	0.98	0	G	0.98
92	0.99	0	0.01	0	A	0.99
93	0.67	0.08	0.11	0.14	A	0.67
94	0.02	0.98	0	0.01	C	0.98
95	0.05	0	0.95	0	G	0.95
96	0	0.19	0	0.8	T	0.8
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.97	0	0.03	C	0.97
100	0.48	0	0.51	0	G	0.51
101	0.96	0	0.04	0	A	0.96
102	0.05	0.04	0.9	0.02	G	0.9
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0.1	0.03	0.83	0.04	G	0.83
106	1	0	0	0	A	1
107	1	0	0	0	A	1
108	0	0.1	0	0.9	T	0.9
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.04	0.09	0.08	0.78	T	0.78
112	0	0	0	1	T	1
113	0	0.01	0.01	0.98	T	0.98
114	0	0.1	0	0.89	T	0.89
115	0	0.02	0	0.98	T	0.98
116	1	0	0	0	A	1
117	0	0.01	0	0.99	T	0.99
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.07	0.01	0.92	0.01	G	0.92
121	0.86	0	0.14	0	A	0.86
122	0	0	0	1	T	1
123	0.02	0.19	0.01	0.78	T	0.78
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0.01	0.9	0.01	0.09	C	0.9
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0.03	0	0.97	T	0.97
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.7	0.01	0.28	0.01	A	0.7
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0.03	0	0.97	0	G	0.97
137	0	0.02	0	0.98	T	0.98
138	0.04	0.1	0.06	0.8	T	0.8
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.01	0	0.99	T	0.99
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0.01	0.03	0.95	0.01	G	0.95
145	0	0.99	0	0.01	C	0.99
146	0	0	0	1	T	1
147	0.05	0.02	0.89	0.04	G	0.89
148	0.04	0	0.96	0	G	0.96
149	0.02	0.92	0.04	0.01	C	0.92
150	0.1	0.16	0.66	0.08	G	0.66
151	0.07	0.01	0.74	0.18	G	0.74
152	0.06	0.78	0.01	0.15	C	0.78
153	0.03	0.21	0.02	0.74	T	0.74
154	0	0	1	0	G	1
155	0	0	1	0	G	1
156	0.01	0.68	0.01	0.31	C	0.68
157	0.11	0.59	0.17	0.13	C	0.59
158	0	0.98	0	0.02	C	0.98
159	0.49	0.23	0.09	0.19	A	0.49
160	0.01	0	0.99	0	G	0.99
161	0.02	0.02	0.96	0.01	G	0.96
162	0.04	0.84	0.03	0.09	C	0.84
163	0.02	0.89	0.02	0.07	C	0.89
164	0.94	0	0.06	0	A	0.94
165	0.08	0.14	0.72	0.06	G	0.72
166	0.01	0.96	0.01	0.03	C	0.96
167	0.98	0.01	0.01	0	A	0.98
168	0.08	0.02	0.88	0.02	G	0.88
169	0	0.98	0.02	0.01	C	0.98
170	0.98	0	0.02	0	A	0.98
171	0.03	0.23	0.03	0.7	T	0.7
172	0	0	1	0	G	1
173	0.04	0	0.95	0	G	0.95
174	0.06	0.67	0.07	0.2	C	0.67
175	0	0.01	0	0.99	T	0.99
176	0.01	0	0.96	0.02	G	0.96
177	0.06	0	0.94	0	G	0.94
178	0	0.01	0	0.99	T	0.99
179	0	0	0	1	T	1
180	0.04	0.02	0.9	0.04	G	0.9
181	0	0	1	0	G	1
182	1	0	0	0	A	1
183	0.09	0	0.9	0	G	0.9
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.1	0.28	0.5	0.13	G	0.5
187	1	0	0	0	A	1
188	1	0	0	0	A	1
189	0	0.38	0	0.61	T	0.61
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.51	0	0.49	C	0.51
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.19	0	0.8	T	0.8
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.12	0	0.87	T	0.87
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.27	0	0.73	T	0.73
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.01	0.13	0.01	0.86	T	0.86
205	0	0.05	0.94	0	G	0.94
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.92	0	0.08	C	0.92
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	0	0	1	T	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.02	0.17	0.02	0.79	T	0.79
220	0	0	1	0	G	1
221	0.17	0.81	0.01	0.01	C	0.81
222	0.02	0.89	0.07	0.02	C	0.89
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.76	0.01	0.22	0.01	A	0.76
226	0.01	0.91	0.03	0.04	C	0.91
227	1	0	0	0	A	1
228	0.18	0.01	0.8	0.01	G	0.8
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	0.88	0	0.12	0	A	0.88
232	1	0	0	0	A	1
233	0	1	0	0	C	1
234	0.1	0.11	0.73	0.06	G	0.73
235	0.47	0	0.53	0	G	0.53
236	0	0	0	1	T	1
237	0.01	0.85	0.01	0.13	C	0.85
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.42	0	0.58	0	G	0.58
241	0.02	0	0.98	0	G	0.98
242	0	0	0	1	T	1
243	0.02	0.09	0.04	0.85	T	0.85
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.03	0.23	0.04	0.7	T	0.7
247	0.04	0	0.96	0	G	0.96
248	0.97	0	0.02	0	A	0.97
249	0.01	0.19	0.01	0.79	T	0.79
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	0.98	0	0.02	0	A	0.98
253	0.81	0.05	0.11	0.03	A	0.81
254	0.07	0.01	0.91	0.01	G	0.91
255	0.03	0.82	0.05	0.11	C	0.82
256	0.04	0	0.95	0	G	0.95
257	0.01	0.35	0.01	0.62	T	0.62
258	0.09	0.01	0.89	0.01	G	0.89
259	0	0.98	0	0.02	C	0.98
260	0	0	0	1	T	1
261	0.08	0	0.91	0	G	0.91
262	1	0	0	0	A	1
263	0.01	0.91	0.01	0.07	C	0.91
264	0.07	0.11	0.14	0.67	T	0.67
265	0.06	0.22	0.03	0.69	T	0.69
266	0	0.99	0	0.01	C	0.99
267	0.12	0.01	0.86	0.01	G	0.86
268	0	0	1	0	G	1
269	0	0	0	0.99	T	0.99
270	0.09	0	0.9	0	G	0.9
271	0.05	0	0.95	0	G	0.95
272	0	0.06	0	0.93	T	0.93
273	0.08	0.01	0.89	0.02	G	0.89
274	0.01	0.01	0.97	0	G	0.97
275	0	1	0	0	C	1
276	0	0.9	0	0.1	C	0.9
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.01	0	0.99	T	0.99
280	0	1	0	0	C	1
281	0.94	0	0.06	0	A	0.94
282	0.06	0.04	0.87	0.02	G	0.87
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.04	0	0.96	T	0.96
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.89	0	0.1	C	0.89
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.55	0	0.45	C	0.55
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0.02	0.25	0.02	0.7	T	0.7
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	0	0	1	0	G	1
301	0	0	0	1	T	1
302	0	0	0	1	T	1
303	0	0.04	0	0.96	T	0.96
304	0	0	0	1	T	1
305	0	0	0	1	T	1
306	0	0.95	0	0.04	C	0.95
307	0.99	0	0.01	0	A	0.99
308	0	0	1	0	G	1
309	0.01	0.27	0.01	0.71	T	0.71
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0.1	0.15	0.68	0.08	G	0.68
313	0.03	0.83	0.05	0.09	C	0.83
314	0.99	0	0.01	0	A	0.99
315	0.21	0.01	0.78	0.01	G	0.78
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.01	0.31	0.01	0.68	T	0.68
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	0.58	0	0.42	0	A	0.58
325	0.99	0	0.01	0	A	0.99
326	0.06	0.88	0.03	0.03	C	0.88
327	0.72	0.02	0.24	0.02	A	0.72
328	0	1	0	0	C	1
329	0.93	0	0.07	0	A	0.93
330	0.01	0.15	0.01	0.83	T	0.83
331	0	0.97	0	0.03	C	0.97
332	0.06	0	0.94	0	G	0.94
333	0.12	0.54	0.26	0.08	C	0.54
334	0.02	0.02	0.95	0.01	G	0.95
335	0	0	0	1	T	1
336	0.5	0.28	0.1	0.12	A	0.5
337	0.08	0	0.91	0	G	0.91
338	0.11	0	0.88	0	G	0.88
339	0.12	0.08	0.76	0.04	G	0.76
340	0.26	0.35	0.38	0.02	G	0.38
341	0.99	0	0	0	A	0.99
342	0.95	0	0.04	0	A	0.95
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.01	0.92	0.01	0.07	C	0.92
346	1	0	0	0	A	1
347	1	0	0	0	A	1
348	0	0.97	0	0.02	C	0.97
349	0	0	1	0	G	1
350	0	0	0	1	T	1
351	0.03	0.79	0.11	0.07	C	0.79
352	0	0	1	0	G	1
353	0	0.02	0	0.98	T	0.98
354	0.06	0.14	0.1	0.7	T	0.7
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0.95	0	0.05	C	0.95
358	0	0	0	1	T	1
359	0	0	0	1	T	1
360	0	0.16	0	0.84	T	0.84
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.34	0.08	0.12	0.46	T	0.46
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0	0.94	0	0.05	C	0.94
368	1	0	0	0	A	1
369	0	0.43	0	0.57	T	0.57
370	0	1	0	0	C	1
371	1	0	0	0	A	1
372	0.01	0	0.99	0	G	0.99
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.04	0.09	0.03	0.83	T	0.83
376	0	1	0	0	C	1
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0.66	0.14	0.13	0.07	A	0.66
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0.13	0	0.87	T	0.87
385	0.95	0.01	0.04	0.01	A	0.95
386	0.37	0.49	0.05	0.09	C	0.49
387	0.93	0.01	0.06	0	A	0.93
388	0.01	0.01	0.98	0	G	0.98
389	1	0	0	0	A	1
390	0.88	0.01	0.1	0.01	A	0.88
391	0.92	0	0.07	0	A	0.92
392	0	0	1	0	G	1
393	0.02	0.2	0.02	0.76	T	0.76
394	0.77	0.01	0.22	0.01	A	0.77
395	0.97	0	0.03	0	A	0.97
396	0	0.99	0	0.01	C	0.99
397	0.21	0.56	0.21	0.02	C	0.56
398	0.97	0	0.03	0	A	0.97
399	0.09	0.04	0.84	0.03	G	0.84
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.86	0.01	0.12	0.01	A	0.86
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	0.99	0	0	0	A	0.99
410	0.97	0	0.03	0	A	0.97
411	0.91	0	0.08	0	A	0.91
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	0.99	0	0.01	0	A	0.99
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.01	0.94	0.01	0.04	C	0.94
418	1	0	0	0	A	1
419	0	0	0	1	T	1
420	0	0.04	0	0.96	T	0.96
421	0	0.04	0	0.96	T	0.96
422	0	0	0	1	T	1
423	0.94	0.01	0.04	0.01	A	0.94
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	0.99	0	0.01	0	A	0.99
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.08	0.02	0.88	0.02	G	0.88
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0.02	0.24	0.05	0.68	T	0.68
433	0.59	0	0.41	0	A	0.59
434	0	0	0	1	T	1
435	0.67	0.05	0.19	0.09	A	0.67
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	0.99	0	0.01	0	A	0.99
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0.97	0	0.02	C	0.97
442	1	0	0	0	A	1
443	0	0	1	0	G	1
444	0	0.97	0.01	0.02	C	0.97
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0	0	1	T	1
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	0.98	0	0.02	C	0.98
451	0.01	0.03	0.96	0.01	G	0.96
452	0	0	0	1	T	1
453	0.02	0.08	0.01	0.89	T	0.89
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.96	0	0.04	C	0.96
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	0.02	0	0.97	0	G	0.97


The most probable ancestral DNA sequence is:
ATGATTATTTTCGAATCCTTAGCCGAGTTTCAGCGTATTTATCGTGCAGGGAAAAAATGGCAGCGCTGTATGGAGGCCATCAACAATATTGAACGTATCGAGCCGAATGTTTTTTATTCGATTGGCGATTCACTGGTTTATCGGCTGGCGGCTGGCCCAGGCCAGCAGCATGGCTGGTTGGAGGGGAATCGCCGTTATTTTGATGTGCACTATTACCTTGCCGGACAGGAAACGGTCGAGGTTGCTGATAAAAGCGTGCTGACTTCGGTGGTGGCCTATCAGGATGAAACCGACCGTGAGTTTTTCAGTGGGCAG---GGTGAAACACATCGCGTAGGGGAAGGCAACGTCGTTATCTTTGATAACCATCAGGCTCACCGATTTACAGAAAGTAACCAGGTA------AAAAAAGTCATTTTAAAAGTGACTATAGAAGACAGCTATTTCGTTAACAAATAG

The most probable DNA sequence without gaps is:
ATGATTATTTTCGAATCCTTAGCCGAGTTTCAGCGTATTTATCGTGCAGGGAAAAAATGGCAGCGCTGTATGGAGGCCATCAACAATATTGAACGTATCGAGCCGAATGTTTTTTATTCGATTGGCGATTCACTGGTTTATCGGCTGGCGGCTGGCCCAGGCCAGCAGCATGGCTGGTTGGAGGGGAATCGCCGTTATTTTGATGTGCACTATTACCTTGCCGGACAGGAAACGGTCGAGGTTGCTGATAAAAGCGTGCTGACTTCGGTGGTGGCCTATCAGGATGAAACCGACCGTGAGTTTTTCAGTGGGCAGGGTGAAACACATCGCGTAGGGGAAGGCAACGTCGTTATCTTTGATAACCATCAGGCTCACCGATTTACAGAAAGTAACCAGGTAAAAAAAGTCATTTTAAAAGTGACTATAGAAGACAGCTATTTCGTTAACAAATAG

The accuracy score for that sequence is 0.92551876379691

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 2.38755934195379e-18.
The natural log of that probability is -40.5762600255604.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	1	A	0	9999	
I	0.99	A	0	9999	
F	0.3366	I	0.33	1.02	Unreliable
E	0.9306	D	0.0594	15.6666666666667	
S	0.9801	T	0.0099	99	
L	0.99	A	0	9999	
A	0.9405	D	0.0237	39.6835443037975	
E	1	A	0	9999	
F	1	A	0	9999	
Q	1	A	0	9999	
R	0.403985	L	0.366717	1.10162604951502	Unreliable
I	0.9207	V	0.0693	13.2857142857143	
Y	0.99	A	0	9999	
R	0.98	H	0.0186	52.6881720430108	
A	0.5278	G	0.1638	3.22222222222222	
G	0.99	A	0	9999	
K	0.99	N	0.02	49.5	
K	1	A	0	9999	
W	1	A	0	9999	
Q	0.99	L	0.01	99	
R	1	A	0	9999	
C	1	A	0	9999	
M	0.9108	I	0.0792	11.5	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
N	0.931095	D	0.049005	19	
N	1	A	0	9999	
I	0.84	V	0.12	7	
E	0.756756	D	0.213444	3.54545454545454	
R	0.92169	H	0.04851	19	
I	1	A	0	9999	
E	0.46512	K	0.43776	1.0625	Unreliable
P	1	A	0	9999	
N	1	A	0	9999	
V	0.99	A	0	9999	
F	0.9702	C	0.0099	98	
Y	0.98	H	0.02	49	
S	1.01	A	0	9999	
I	0.8514	V	0.14	6.08142857142857	
G	1.01	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
V	0.9506	I	0.027636	34.3971631205674	
Y	1	A	0	9999	
R	1	A	0	9999	
L	0.9994	F	0.0006	1665.66666666667	
A	0.8832	G	0.0384	23	
A	0.5772	S	0.141065	4.09173076241449	
G	1.01	A	0	9999	
P	0.5782	A	0.1666	3.47058823529412	
G	0.9504	A	0.0198	48	
Q	0.66928	H	0.16732	4	
Q	0.903168	H	0.037632	24	
H	0.893172	Q	0.057624	15.5	
G	0.95	D	0.0348	27.2988505747126	
W	0.893376	X	0.066924	13.3491124260355	
L	0.9406	F	0.0594	15.8350168350168	
E	0.99	A	0	9999	
G	1.01	A	0	9999	
N	0.99	A	0	9999	
R	1	A	0	9999	
R	0.99	A	0	9999	
Y	0.99	A	0	9999	
F	1	A	0	9999	
D	0.99	E	0.02	49.5	
V	0.94	L	0.05	18.8	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
A	0.81	D	0.1547	5.23594053005818	
G	1	A	0	9999	
Q	0.8918	X	0.0392	22.75	
E	1	A	0	9999	
T	1	A	0	9999	
V	0.53	I	0.4653	1.13905007522029	Unreliable
E	1	A	0	9999	
V	0.98	I	0.0192	51.0416666666667	
A	1	R	0	9999	
D	0.912576	N	0.038024	24	
K	1	A	0	9999	
S	0.685806	R	0.104923	6.53627898554178	
V	0.589	A	0.3325	1.77142857142857	
L	0.99	A	0	9999	
T	0.9009	I	0.0595	15.1411764705882	
S	0.6831	P	0.2178	3.13636363636364	
V	0.9801	A	0	9999	
V	0.8835	A	0.057	15.5	
A	0.97	P	0.01	97	
Y	1	A	0	9999	
Q	0.8742	R	0.0594	14.7171717171717	
D	1	A	0	9999	
E	1	A	0	9999	
T	0.99	A	0	9999	
D	1	A	0	9999	
R	0.99	A	0	9999	
E	1	A	0	9999	
F	1	A	0	9999	
F	0.99	A	0	9999	
S	0.9702	R	0.0198	49	
G	1.01	A	0	9999	
Q	0.813483	X	0.088398	9.20250458155162	
	0	-	0	0
G	1.01	A	0	9999	
E	1	A	0	9999	
T	0.8712	K	0.057024	15.2777777777778	
H	0.9114	R	0.07	13.02	
R	0.9118	H	0.036084	25.2688172043011	
V	0.95	L	0.026	36.5384615384615	
G	0.8008	E	0.088088	9.09090909090909	
E	0.372438	Q	0.343035	1.08571428571429	Unreliable
G	1.01	A	0	9999	
N	0.99	A	0	9999	
V	1	A	0	9999	
V	0.98	A	0.02	49	
I	1	A	0	9999	
F	1	A	0	9999	
D	0.54	E	0.46	1.17391304347826	Unreliable
N	1	A	0	9999	
H	0.94	Y	0.05	18.8	
Q	1	A	0	9999	
A	0.99	R	0	9999	
H	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
T	0.4655	K	0.347985	1.33770133770134	Unreliable
E	0.9604	D	0.0196	49	
S	0.8832	G	0.07	12.6171428571429	
N	0.7469	D	0.2134	3.5	
Q	0.505176	E	0.189441	2.66666666666667	
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
K	0.950697	R	0.029403	32.3333333333333	
K	1	A	0	9999	
V	1	A	0	9999	
I	1	A	0	9999	
L	0.9808	F	0.0192	51.0833333333333	
K	1	A	0	9999	
V	1	A	0	9999	
T	0.99	A	0	9999	
I	0.4779	V	0.41	1.16560975609756	Unreliable
E	1	A	0	9999	
D	0.99	A	0	9999	
S	0.99	R	0.01	99	
Y	1	A	0	9999	
F	1	A	0	9999	
V	0.96	L	0.0303	31.6831683168317	
N	1	A	0	9999	
K	1	A	0	9999	
X	0.99	A	0	9999	


The most probable ancestral protein sequence is:
MIIFESLAEFQRIYRAGKKWQRCMEAINNIERIEPNVFYSIGDSLVYRLAAGPGQQHGWLEGNRRYFDVHYYLAGQETVEVADKSVLTSVVAYQDETDREFFSGQ-GETHRVGEGNVVIFDNHQAHRFTESNQV--KKVILKVTIEDSYFVNKX

The most probable ancestral protein sequence without gaps is:
MIIFESLAEFQRIYRAGKKWQRCMEAINNIERIEPNVFYSIGDSLVYRLAAGPGQQHGWLEGNRRYFDVHYYLAGQETVEVADKSVLTSVVAYQDETDREFFSGQGETHRVGEGNVVIFDNHQAHRFTESNQVKKVILKVTIEDSYFVNKX

The accuracy score for that sequence is 0.922574953642385

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 3.08925880314996e-07
The natural log of that probability is -14.9901644583527.

